In 2002 I took a ten day sea kayak trip through northern Patagonia's Pumalin Park and an archipelago of islands and fishing villages in Chiloe. This is one of the most beautiful areas I have been. I highly recommend a wonderful outfitter that I used for this trip, Pancho at Sea Kayak Chile. 

In my own blog I excerpted a story from the New York Times on Pumalin Park where we kayaked.  

I don't see Chile on Lee's itinerary but I highly recommend this trip.